Marginalia

A call for collaborators to experiment with AT Protocol for open research.

Putting out a public call to explore how researchers can publish, share, and collaborate transparently while retaining ownership for their work.

November 01, 2025

Step 1. Find collaborators.

Here we go... šŸ¤ž

Yesterday, I posted a thread to my Bluesky account.

In it, I reach out to a few key figures I’ve discovery and connected with through the platform.

My goal was to find collaborators to experiment with AT Protocol and explore new ways for researchers to publish, share, and collaborate directly on the platform.

B. Prendergast's avatar
B. Prendergast
3mo

I see a huge opportunity for how the AT Protocol could reshape academic publishing. Imagine researchers publishing continuously and atomically — before, during, and after research projects — in public connected continuous streams of discovery and insight.

tl;dr

You can read the full thread above, but in brief, I believe AT Protocol offers a genuinely exciting foundation for the future of scholarly communication and research communities.

The core elements are already in place. Open standards ensure transparency and long-term accessibility, allowing research outputs to remain compatible across systems. Data interoperability makes it possible to connect tools, repositories, and datasets without platform lock-in. Collaboration tools enable open exchange between researchers while maintaining clear attribution. Individual ownership through personal data servers (PDS) gives users full control over their content and identity forever.

Verifiable identities tie authors to their work across platforms, enabling persistent attribution and reputation. Shared lexicons can define publication contexts (publishers, journals, preprints...), new and existing document formats (abstracts, papers, proceedings), even peer reviews themselves, so research artefacts can be discovered, cited, and built upon consistently. Labelers and moderation lists help surface credible work and uphold research integrity. Feeds and Lists provide a way to disseminate findings, and discover new developments, and make new connections in real time.

Publishing in this way could enable researchers to share work transparently and collaboratively—without fear of being scooped or losing rights—while strengthening careers and communities.

Excitement, plus a little trepidation

I always feel a bit conflicted about making posts like this in public—especially when tagging (spamming) folks who have far more experience in these areas than I do.

It's never fun exposing myself to the potential for tumbleweeds, but I’m genuinely drawn to the possibility. And actually the response was pretty positive.

I spent the past 5 years working on a VC-funded platform that aimed to revolutionise academic publishing. Looking back, I can see it was destined to fail because the core driver of that work was to preserve the status quo and extract value for shareholders.

(I'm not against profit, it must come as a reward for a meaningful change for the better)

The upside was spending time with authors, editors, reviewers, integrity investigators, librarians, and funders—learning about their goals and frustrations. Coming from outside academia gave me a different vantage point: I felt I could see the forest for the trees.

The early responses suggest I’m not alone in this thinking. That’s really encouraging—it gives me both confidence and motivation to take this further.

Finding the small ATProto Science community was definitely the most exciting outcome of the day.

ATProto Science
ATProto Science is about using ATProto for science applications, such as publishing, curation, data sharing or social discourse around research.
https://discourse.atprotocol.community/c/atproto-science/22/none

Now, if I could make one wish šŸ§ž it's for a little funding to focus on this work properly. Baby steps!

Responses

Boris's avatar
Boris
3mo

@ronentk.me and @tgoerke.bsky.social have done an intro post in the forum discourse.atprotocol.community/t/intros-and...

Intros and kickoff thread for ATProto x Science

Intros and kickoff thread for ATProto x Science

Hey there! My name is Ethan, I am a Research Software Engineer at the Open Molecular Software Foundation wherein I am trying to modernize our software teams’ DevOps flows. My background is primarily i...


https://discourse.atprotocol.community/t/intros-and-kickoff-thread-for-atproto-x-science/156/10
Wesley Finck's avatar
Wesley Finck
3mo

Time to de-enshittify research publishing

Rowan Cockett's avatar
Rowan Cockett
3mo

I would love to brainstorm with you a bit. We are running a scientific content standards workshop at the end of next week. Would you by chance have a small amount of time early next week to chat?

Marc Beninca's avatar
Marc Beninca
3mo

That would be genuinely awesome!

Mike Morrison's avatar
Mike Morrison
3mo

Atomic, continuous publishing is exactly what we’re building at @curvenote.com and @continuous.foundation! Totally the future. But will be a huge norm shift for scientists from spending two years writing one big paper that then takes two more years to publish.

Paul Rohr's avatar
Paul Rohr
3mo

Midway through an intriguing 🧵 on the suitability for #atproto as a substrate for #ContinuousPublishing as an alternate model for disseminating scientific research Might someday span the gaps between: - microblogging, - preprints, + - traditional published papers Vannevar would be so proud!

Robin Berjon's avatar
Robin Berjon
3mo

I think we should dogfood from day 1 by starting The International Journal of Authenticated Takes. We accept publications in multiple lexica that are AT-relevant, and we publish as a peer-review overlay journal.

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AT Protocol is a game-changer for scholarly communication and academic publishing.